Transcriptional profile of sweet orange in response to chitosan and salicylic acid
Identifieur interne : 000399 ( Main/Exploration ); précédent : 000398; suivant : 000400Transcriptional profile of sweet orange in response to chitosan and salicylic acid
Auteurs : Danila Souza Oliveira Coqueiro ; Alessandra Alves De Souza ; Marco Aurélio Takita ; Carolina Munari Rodrigues ; Luciano Takeshi Kishi ; Marcos Antonio MachadoSource :
- BMC Genomics [ 1471-2164 ] ; 2015.
English descriptors
- KwdEn :
- Chitosan (pharmacology), Citrus sinensis (drug effects), Citrus sinensis (genetics), Citrus sinensis (metabolism), Down-Regulation (drug effects), Gene Expression Profiling, Genes, Plant, Oxidation-Reduction, Plant Growth Regulators (metabolism), Plant Leaves (drug effects), Plant Leaves (genetics), Plant Leaves (metabolism), RNA (analysis), RNA (isolation & purification), RNA (metabolism), Salicylic Acid (pharmacology), Sequence Analysis, RNA, Signal Transduction (drug effects), Transcription Factors (metabolism), Up-Regulation (drug effects).
- MESH :
- chemical , analysis : RNA.
- chemical , isolation & purification : RNA.
- chemical , metabolism : Plant Growth Regulators, RNA, Transcription Factors.
- chemical , pharmacology : Chitosan, Salicylic Acid.
- drug effects : Citrus sinensis, Down-Regulation, Plant Leaves, Signal Transduction, Up-Regulation.
- genetics : Citrus sinensis, Plant Leaves.
- metabolism : Citrus sinensis, Plant Leaves.
- Gene Expression Profiling, Genes, Plant, Oxidation-Reduction, Sequence Analysis, RNA.
Abstract
Resistance inducers have been used in annual crops as an alternative for disease control. Wood perennial fruit trees, such as those of the citrus species, are candidates for treatment with resistance inducers, such as salicylic acid (SA) and chitosan (CHI). However, the involved mechanisms in resistance induced by elicitors in citrus are currently few known.
In the present manuscript, we report information regarding the transcriptional changes observed in sweet orange in response to exogenous applications of SA and CHI using RNA-seq technology. More genes were induced by SA treatment than by CHI treatment. In total, 1,425 differentially expressed genes (DEGs) were identified following treatment with SA, including the important genes
We expanded the available information regarding induced defense by elicitors in a species of
The online version of this article (doi:10.1186/s12864-015-1440-5) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1186/s12864-015-1440-5
PubMed: 25887907
PubMed Central: 4415254
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Transcriptional profile of sweet orange in response to chitosan and salicylic acid</title><author><name sortKey="Coqueiro, Danila Souza Oliveira" sort="Coqueiro, Danila Souza Oliveira" uniqKey="Coqueiro D" first="Danila Souza Oliveira" last="Coqueiro">Danila Souza Oliveira Coqueiro</name><affiliation><nlm:aff id="Aff1">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo Brasil</nlm:aff><wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry></affiliation><affiliation><nlm:aff id="Aff2">Universidade Federal da Bahia, UFBA, Vitória da Conquista, Bahia Brasil</nlm:aff><wicri:noCountry code="subfield">Bahia Brasil</wicri:noCountry></affiliation></author><author><name sortKey="De Souza, Alessandra Alves" sort="De Souza, Alessandra Alves" uniqKey="De Souza A" first="Alessandra Alves" last="De Souza">Alessandra Alves De Souza</name><affiliation><nlm:aff id="Aff1">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo Brasil</nlm:aff><wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry></affiliation></author><author><name sortKey="Takita, Marco Aurelio" sort="Takita, Marco Aurelio" uniqKey="Takita M" first="Marco Aurélio" last="Takita">Marco Aurélio Takita</name><affiliation><nlm:aff id="Aff1">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo Brasil</nlm:aff><wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry></affiliation></author><author><name sortKey="Rodrigues, Carolina Munari" sort="Rodrigues, Carolina Munari" uniqKey="Rodrigues C" first="Carolina Munari" last="Rodrigues">Carolina Munari Rodrigues</name><affiliation><nlm:aff id="Aff1">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo Brasil</nlm:aff><wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry></affiliation></author><author><name sortKey="Kishi, Luciano Takeshi" sort="Kishi, Luciano Takeshi" uniqKey="Kishi L" first="Luciano Takeshi" last="Kishi">Luciano Takeshi Kishi</name><affiliation><nlm:aff id="Aff3">Universidade Federal de São Carlos, São Carlos, São Paulo Brasil</nlm:aff><wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry></affiliation></author><author><name sortKey="Machado, Marcos Antonio" sort="Machado, Marcos Antonio" uniqKey="Machado M" first="Marcos Antonio" last="Machado">Marcos Antonio Machado</name><affiliation><nlm:aff id="Aff1">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo Brasil</nlm:aff><wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">25887907</idno><idno type="pmc">4415254</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4415254</idno><idno type="RBID">PMC:4415254</idno><idno type="doi">10.1186/s12864-015-1440-5</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">000581</idno><idno type="wicri:Area/Pmc/Curation">000580</idno><idno type="wicri:Area/Pmc/Checkpoint">000313</idno><idno type="wicri:source">PubMed</idno><idno type="wicri:Area/PubMed/Corpus">000188</idno><idno type="wicri:Area/PubMed/Curation">000188</idno><idno type="wicri:Area/PubMed/Checkpoint">000188</idno><idno type="wicri:Area/Ncbi/Merge">001A94</idno><idno type="wicri:Area/Ncbi/Curation">001A94</idno><idno type="wicri:Area/Ncbi/Checkpoint">001A94</idno><idno type="wicri:Area/Main/Merge">000399</idno><idno type="wicri:Area/Main/Curation">000399</idno><idno type="wicri:Area/Main/Exploration">000399</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Transcriptional profile of sweet orange in response to chitosan and salicylic acid</title><author><name sortKey="Coqueiro, Danila Souza Oliveira" sort="Coqueiro, Danila Souza Oliveira" uniqKey="Coqueiro D" first="Danila Souza Oliveira" last="Coqueiro">Danila Souza Oliveira Coqueiro</name><affiliation><nlm:aff id="Aff1">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo Brasil</nlm:aff><wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry></affiliation><affiliation><nlm:aff id="Aff2">Universidade Federal da Bahia, UFBA, Vitória da Conquista, Bahia Brasil</nlm:aff><wicri:noCountry code="subfield">Bahia Brasil</wicri:noCountry></affiliation></author><author><name sortKey="De Souza, Alessandra Alves" sort="De Souza, Alessandra Alves" uniqKey="De Souza A" first="Alessandra Alves" last="De Souza">Alessandra Alves De Souza</name><affiliation><nlm:aff id="Aff1">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo Brasil</nlm:aff><wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry></affiliation></author><author><name sortKey="Takita, Marco Aurelio" sort="Takita, Marco Aurelio" uniqKey="Takita M" first="Marco Aurélio" last="Takita">Marco Aurélio Takita</name><affiliation><nlm:aff id="Aff1">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo Brasil</nlm:aff><wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry></affiliation></author><author><name sortKey="Rodrigues, Carolina Munari" sort="Rodrigues, Carolina Munari" uniqKey="Rodrigues C" first="Carolina Munari" last="Rodrigues">Carolina Munari Rodrigues</name><affiliation><nlm:aff id="Aff1">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo Brasil</nlm:aff><wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry></affiliation></author><author><name sortKey="Kishi, Luciano Takeshi" sort="Kishi, Luciano Takeshi" uniqKey="Kishi L" first="Luciano Takeshi" last="Kishi">Luciano Takeshi Kishi</name><affiliation><nlm:aff id="Aff3">Universidade Federal de São Carlos, São Carlos, São Paulo Brasil</nlm:aff><wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry></affiliation></author><author><name sortKey="Machado, Marcos Antonio" sort="Machado, Marcos Antonio" uniqKey="Machado M" first="Marcos Antonio" last="Machado">Marcos Antonio Machado</name><affiliation><nlm:aff id="Aff1">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo Brasil</nlm:aff><wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry></affiliation></author></analytic><series><title level="j">BMC Genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Chitosan (pharmacology)</term><term>Citrus sinensis (drug effects)</term><term>Citrus sinensis (genetics)</term><term>Citrus sinensis (metabolism)</term><term>Down-Regulation (drug effects)</term><term>Gene Expression Profiling</term><term>Genes, Plant</term><term>Oxidation-Reduction</term><term>Plant Growth Regulators (metabolism)</term><term>Plant Leaves (drug effects)</term><term>Plant Leaves (genetics)</term><term>Plant Leaves (metabolism)</term><term>RNA (analysis)</term><term>RNA (isolation & purification)</term><term>RNA (metabolism)</term><term>Salicylic Acid (pharmacology)</term><term>Sequence Analysis, RNA</term><term>Signal Transduction (drug effects)</term><term>Transcription Factors (metabolism)</term><term>Up-Regulation (drug effects)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>RNA</term></keywords><keywords scheme="MESH" type="chemical" qualifier="isolation & purification" xml:lang="en"><term>RNA</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Plant Growth Regulators</term><term>RNA</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Chitosan</term><term>Salicylic Acid</term></keywords><keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Citrus sinensis</term><term>Down-Regulation</term><term>Plant Leaves</term><term>Signal Transduction</term><term>Up-Regulation</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Citrus sinensis</term><term>Plant Leaves</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Citrus sinensis</term><term>Plant Leaves</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Expression Profiling</term><term>Genes, Plant</term><term>Oxidation-Reduction</term><term>Sequence Analysis, RNA</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>Resistance inducers have been used in annual crops as an alternative for disease control. Wood perennial fruit trees, such as those of the citrus species, are candidates for treatment with resistance inducers, such as salicylic acid (SA) and chitosan (CHI). However, the involved mechanisms in resistance induced by elicitors in citrus are currently few known.</p></sec><sec><title>Results</title><p>In the present manuscript, we report information regarding the transcriptional changes observed in sweet orange in response to exogenous applications of SA and CHI using RNA-seq technology. More genes were induced by SA treatment than by CHI treatment. In total, 1,425 differentially expressed genes (DEGs) were identified following treatment with SA, including the important genes <italic>WRKY5</italic>0, <italic>PR2,</italic> and <italic>PR9</italic>, which are known to participate in the salicylic acid signaling pathway, and genes involved in ethylene/Jasmonic acid biosynthesis (<italic>ACS1</italic>2, <italic>AP2</italic> domain-containing transcription factor, and <italic>OPR3</italic>). In addition, SA treatment promoted the induction of a subset of genes involved in several metabolic processes, such as redox states and secondary metabolism, which are associated with biotic stress. For CHI treatment, there were 640 DEGs, many of them involved in secondary metabolism. For both SA and CHI treatments, the auxin pathway genes were repressed, but SA treatment promoted induction in the ethylene and jasmonate acid pathway genes, in addition to repressing the abscisic acid pathway genes. Chitosan treatment altered some hormone metabolism pathways. The DEGs were validated by quantitative Real-Time PCR (qRT-PCR), and the results were consistent with the RNA-seq data, with a high correlation between the two analyses.</p></sec><sec><title>Conclusions</title><p>We expanded the available information regarding induced defense by elicitors in a species of <italic>Citrus</italic> that is susceptible to various diseases and identified the molecular mechanisms by which this defense might be mediated.</p></sec><sec><title>Electronic supplementary material</title><p>The online version of this article (doi:10.1186/s12864-015-1440-5) contains supplementary material, which is available to authorized users.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Mauch Mani, B" uniqKey="Mauch Mani B">B Mauch-Mani</name></author><author><name sortKey="Metraux, J" uniqKey="Metraux J">J Métraux</name></author></analytic></biblStruct><biblStruct><analytic><author><name 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sortKey="Ayres Junior, M" uniqKey="Ayres Junior M">M Ayres Júnior</name></author><author><name sortKey="Ayres, Dl" uniqKey="Ayres D">DL Ayres</name></author><author><name sortKey="Santos, Aa" uniqKey="Santos A">AA Santos</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list></list><tree><noCountry><name sortKey="Coqueiro, Danila Souza Oliveira" sort="Coqueiro, Danila Souza Oliveira" uniqKey="Coqueiro D" first="Danila Souza Oliveira" last="Coqueiro">Danila Souza Oliveira Coqueiro</name><name sortKey="De Souza, Alessandra Alves" sort="De Souza, Alessandra Alves" uniqKey="De Souza A" first="Alessandra Alves" last="De Souza">Alessandra Alves De Souza</name><name sortKey="Kishi, Luciano Takeshi" sort="Kishi, Luciano Takeshi" uniqKey="Kishi L" first="Luciano Takeshi" last="Kishi">Luciano Takeshi Kishi</name><name sortKey="Machado, Marcos Antonio" sort="Machado, Marcos Antonio" uniqKey="Machado M" first="Marcos Antonio" last="Machado">Marcos Antonio Machado</name><name sortKey="Rodrigues, Carolina Munari" sort="Rodrigues, Carolina Munari" uniqKey="Rodrigues C" first="Carolina Munari" last="Rodrigues">Carolina Munari Rodrigues</name><name sortKey="Takita, Marco Aurelio" sort="Takita, Marco Aurelio" uniqKey="Takita M" first="Marco Aurélio" last="Takita">Marco Aurélio Takita</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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